C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-stranded DNA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505980 SSBP2-007 ENSG00000145687 9606 - 5:81420014-81751047 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLungMuscleOvaryPlacentaTestisENST00000505980
Transcript ID Heart Lung Muscle Ovary Placenta Testis
ENST00000505980 2.471±0.00 3.620±0.00 3.046±0.00 2.389±1.41 1.908±0.39 4.643±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TJ CIL_0005TJ_0002 CGP 5:81330005-81751797
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 NAS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 NAS regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042122 Ssbp2-004 protein_coding Mus_musculus 0 1598
ENSMUST00000004094 Ssbp2-001 protein_coding Mus_musculus 0 1598
ENSMUST00000117239 Gm12470-001 processed_pseudogene Mus_musculus 0 857
ENSMUST00000156547 Ssbp2-008 processed_transcript Mus_musculus 0 699
ENSMUST00000137658 Ssbp2-009 retained_intron Mus_musculus 0 627
ENSMUST00000137493 Ssbp2-003 retained_intron Mus_musculus 0 468
ENSMUST00000144659 Ssbp2-002 retained_intron Mus_musculus 0 468
ENSMUST00000133984 Ssbp2-006 processed_transcript Mus_musculus 0 348
ENSMUST00000138488 Ssbp2-007 nonsense_mediated_decay Mus_musculus 0 243
ENSMUST00000141381 Ssbp2-005 retained_intron Mus_musculus 0 243

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