C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117743 Top3a-001 ENSMUSG00000002814 10090 - 11:60740059-60777287 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryENSMUST00000117743
Transcript ID Muscle Ovary
ENSMUST00000117743 0.299±0.00 2.134±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K3 CIL_0005K3_0002 CGP 11:60728398-60777365
CIL_00002B CIL_00002B_0003 CGP 11:60740058-60788287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003917 IEA DNA topoisomerase type I activity
GO:0005694 IEA chromosome
GO:0006265 IEA DNA topological change
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321105 TOP3A-001 protein_coding Homo_sapiens 0 2608
ENST00000461127 TOP3A-004 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000469739 TOP3A-003 retained_intron Homo_sapiens 0 929
ENST00000472959 TOP3A-005 retained_intron Homo_sapiens 3e-23 113
ENST00000477508 TOP3A-006 retained_intron Homo_sapiens 0 329
ENST00000542570 TOP3A-201 protein_coding Homo_sapiens 0 2608
ENST00000580095 TOP3A-020 protein_coding Homo_sapiens 0 2573
ENST00000581536 TOP3A-012 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000582981 TOP3A-009 nonsense_mediated_decay Homo_sapiens 0 2272
ENST00000583328 TOP3A-018 retained_intron Homo_sapiens 0 451
ENST00000583804 TOP3A-013 retained_intron Homo_sapiens 0 1273
ENST00000584582 TOP3A-010 nonsense_mediated_decay Homo_sapiens 0 2272
ENST00000584669 TOP3A-011 processed_transcript Homo_sapiens 0 453

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