C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S13, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117927 Rps13-ps4-001 ENSMUSG00000081378 10090 - 8:119602170-119602625 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117927
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117927 0.237±0.11 0.520±0.10 1.346±0.63 0.305±0.16 0.219±0.05 0.113±0.01 0.138±0.04 0.361±0.19 0.111±0.00 0.402±0.00 0.710±0.16 0.469±0.39 0.319±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AR CIL_0002AR_0002 CGP 8:119575235-119605222
CIL_0002AS CIL_0002AS_0002 CGP 8:119597975-119616926

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228140 RPS13-010 protein_coding Homo_sapiens 0 344
ENST00000437890 RPS13P2-001 processed_pseudogene Homo_sapiens 0 459
ENST00000448956 RP6-29D12.3-001 processed_pseudogene Homo_sapiens 3e-26 121
ENST00000458382 RP11-272G22.2-001 processed_pseudogene Homo_sapiens 1e-26 122
ENST00000525634 RPS13-001 protein_coding Homo_sapiens 0 510
ENST00000525828 RPS13-005 retained_intron Homo_sapiens 0 477
ENST00000526895 RPS13-002 processed_transcript Homo_sapiens 0 484
ENST00000528074 RPS13-004 retained_intron Homo_sapiens 2e-17 94
ENST00000531908 RPS13-008 retained_intron Homo_sapiens 0 340
ENST00000533969 RPS13-007 protein_coding Homo_sapiens 1.00053e-42 176
ENST00000534329 RPS13-003 retained_intron Homo_sapiens 2.00386e-43 180

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