C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 3, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118595 Cbx3-ps3-001 ENSMUSG00000080793 10090 + 4:83701084-83702036 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000118595
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000118595 0.056±0.00 0.018±0.00 0.104±0.11 0.062±0.00 0.111±0.03 0.034±0.01 0.094±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051U CIL_00051U_0003 CGP 4:83455680-83864670
CIL_0007VI CIL_0007VI_0002 VISTA 4:83494853-84095171
CIL_0007PP CIL_0007PP_0002 UCNEbase 4:83661885-85119123

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337620 CBX3-001 protein_coding Homo_sapiens 0 536
ENST00000396386 CBX3-002 protein_coding Homo_sapiens 0 536
ENST00000402326 CBX3P9-001 processed_pseudogene Homo_sapiens 0 486
ENST00000409747 CBX3-003 protein_coding Homo_sapiens 1e-38 165
ENST00000456948 CBX3-004 protein_coding Homo_sapiens 0 196
ENST00000462165 CBX3-006 protein_coding Homo_sapiens 0 302
ENST00000481300 CBX3-007 retained_intron Homo_sapiens 0 202
ENST00000497498 CBX3-008 processed_transcript Homo_sapiens 0 416
ENST00000532412 CBX3P8-001 processed_pseudogene Homo_sapiens 0 287
ENST00000538909 CBX3P4-001 transcribed_processed_pseudogene Homo_sapiens 0 261
ENST00000552017 CBX3P5-001 processed_pseudogene Homo_sapiens 0 398

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