C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox homolog 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396386 CBX3-002 ENSG00000122565 9606 + 7:26201693-26213351 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000396386
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000396386 24.180±0.00 6.027±0.00 22.957±13.23 19.834±8.01 25.226±11.99 3.988±0.00 35.092±27.38 15.055±5.84 40.490±0.00 3.779±0.00 41.627±18.16 34.439±3.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q3 CIL_0008Q3_0001 VISTA 7:25714231-26318034
CIL_000874 CIL_000874_0001 VISTA 7:25760923-26361842
CIL_0002CP CIL_0002CP_0001 CGP 7:26152240-26201529
CIL_0009DE CIL_0009DE_0001 VISTA 7:26185042-26786016
CIL_0002CO CIL_0002CO_0001 CGP 7:26189927-26213356
CIL_0007OD CIL_0007OD_0001 UCNEbase 7:26191819-26506343
CIL_0002CN CIL_0002CN_0001 CGP 7:26201162-26374329

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000779 ISS condensed chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005635 ISS nuclear envelope
GO:0005637 NAS nuclear inner membrane
GO:0005719 IDA nuclear euchromatin
GO:0005720 IDA nuclear heterochromatin
GO:0005819 IDA spindle
GO:0006338 NAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0019899 IPI enzyme binding
GO:0019904 IPI protein domain specific binding
GO:0031618 ISS nuclear pericentric heterochromatin
GO:0042802 IPI identical protein binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process
GO:1990226 IPI histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031862 Cbx3-002 protein_coding Mus_musculus 0 968
ENSMUST00000114446 Cbx3-005 protein_coding Mus_musculus 0 931
ENSMUST00000094623 Cbx3-001 protein_coding Mus_musculus 0 926
ENSMUST00000081455 Gm10068-001 processed_pseudogene Mus_musculus 0 721
ENSMUST00000181108 Gm6984-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000091531 Gm5196-201 processed_pseudogene Mus_musculus 0 654
ENSMUST00000091539 Gm6917-201 processed_pseudogene Mus_musculus 0 638
ENSMUST00000091545 Gm6901-201 processed_pseudogene Mus_musculus 0 634
ENSMUST00000099421 Gm5792-201 processed_pseudogene Mus_musculus 0 628
ENSMUST00000185597 RP23-304F24.1-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000118595 Cbx3-ps3-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000141711 Cbx3-007 protein_coding Mus_musculus 0 494
ENSMUST00000190083 RP23-231B19.1-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000188772 Als2cr12-002 protein_coding Mus_musculus 0 381
ENSMUST00000114445 Cbx3-004 protein_coding Mus_musculus 0 270

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