C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: runt related transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119564 Runx3-002 ENSMUSG00000070691 10090 + 4:135152496-135176181 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungOvaryPlacentaTestisENSMUST00000119564
Transcript ID Adipose Adrenal Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000119564 0.051±0.00 0.288±0.16 1.992±1.13 0.128±0.02 0.445±0.36 0.228±0.02 0.130±0.00 0.151±0.02 0.554±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZX CIL_0007ZX_0002 VISTA 4:134905845-135507207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0002062 IGI chondrocyte differentiation
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0006468 ISS protein phosphorylation
GO:0007411 IMP axon guidance
GO:0031069 IMP hair follicle morphogenesis
GO:0031175 IMP neuron projection development
GO:0032609 IDA interferon-gamma production
GO:0042789 IDA mRNA transcription from RNA polymerase II promoter
GO:0045786 IMP negative regulation of cell cycle
GO:0048469 IGI cell maturation
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:2001238 IMP positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082265 runx2b-202 protein_coding Danio_rerio 3e-21 108
ENSDART00000082283 runx2b-204 protein_coding Danio_rerio 3e-21 108
ENSDART00000048978 runx2b-201 protein_coding Danio_rerio 3e-21 108
ENSDART00000082276 runx2b-203 protein_coding Danio_rerio 3e-21 108
ENSDART00000125898 runx2b-206 protein_coding Danio_rerio 3e-21 108
ENSDART00000130609 runx2b-207 protein_coding Danio_rerio 3e-21 108
ENST00000300305 RUNX1-002 protein_coding Homo_sapiens 0 383
ENST00000308873 RUNX3-001 protein_coding Homo_sapiens 0 1507
ENST00000338888 RUNX3-002 protein_coding Homo_sapiens 0 1480
ENST00000344691 RUNX1-001 protein_coding Homo_sapiens 0 383
ENST00000358356 RUNX1-005 protein_coding Homo_sapiens 0 383
ENST00000359524 RUNX2-001 protein_coding Homo_sapiens 0 327
ENST00000371432 RUNX2-201 protein_coding Homo_sapiens 0 327
ENST00000371436 RUNX2-004 protein_coding Homo_sapiens 0 327
ENST00000371438 RUNX2-003 protein_coding Homo_sapiens 0 327
ENST00000399237 RUNX1-012 protein_coding Homo_sapiens 0 383
ENST00000399240 RUNX1-009 protein_coding Homo_sapiens 0 361
ENST00000399916 RUNX3-201 protein_coding Homo_sapiens 0 1480
ENST00000437180 RUNX1-201 protein_coding Homo_sapiens 0 383
ENST00000455571 RUNX1-010 protein_coding Homo_sapiens 0 267
ENST00000465038 RUNX2-002 protein_coding Homo_sapiens 0 327
ENST00000478660 RUNX2-009 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000496967 RUNX3-004 processed_transcript Homo_sapiens 0 632
ENST00000576263 RUNX2-008 protein_coding Homo_sapiens 0 327

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