C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: runt-related transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455571 RUNX1-010 ENSG00000159216 9606 - 21:34880606-35049298 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZS CIL_0008ZS_0001 VISTA 21:34243666-34847364
CIL_00094R CIL_00094R_0001 VISTA 21:34258399-34859715
CIL_00078F CIL_00078F_0001 CGP 21:34669389-36004667

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023673 Runx1-001 protein_coding Mus_musculus 0 859
ENSMUST00000168195 Runx1-004 protein_coding Mus_musculus 0 529
ENSMUST00000113956 Runx1-003 protein_coding Mus_musculus 0 529
ENSMUST00000189126 Runx1-005 retained_intron Mus_musculus 0 527
ENSMUST00000186296 Runx1-002 protein_coding Mus_musculus 0 374
ENSMUST00000189679 Runx1-006 protein_coding Mus_musculus 0 335
ENSDART00000130697 RUNX1 (2 of 2)-201 protein_coding Danio_rerio 0 324
ENSMUST00000119564 Runx3-002 protein_coding Mus_musculus 0 267
ENSMUST00000056977 Runx3-001 protein_coding Mus_musculus 0 267
ENSMUST00000156478 Runx3-003 retained_intron Mus_musculus 0 265

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