C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: profilin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120289 Pfn2-003 ENSMUSG00000027805 10090 - 3:57844670-57847489 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverPlacentaENSMUST00000120289
Transcript ID Brain Liver Placenta
ENSMUST00000120289 56.810±0.00 0.344±0.00 1.738±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002R5 CIL_0002R5_0002 CGP 3:57736066-57847564
CIL_0002QZ CIL_0002QZ_0002 CGP 3:57841895-58466787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0030036 IEA actin cytoskeleton organization
GO:0030837 IDA negative regulation of actin filament polymerization
GO:0030838 IMP positive regulation of actin filament polymerization
GO:0043195 IDA terminal bouton
GO:2000300 IMP regulation of synaptic vesicle exocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239940 PFN2-001 protein_coding Homo_sapiens 0 525
ENST00000423691 PFN2-003 protein_coding Homo_sapiens 0 525
ENST00000452853 PFN2-002 protein_coding Homo_sapiens 0 525
ENST00000460404 PFN2-004 nonsense_mediated_decay Homo_sapiens 0 484
ENST00000461868 PFN2-009 protein_coding Homo_sapiens 0 597
ENST00000461930 PFN2-011 protein_coding Homo_sapiens 0 556
ENST00000468323 PFN2-012 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000475518 PFN2-015 protein_coding Homo_sapiens 0 281
ENST00000481275 PFN2-016 protein_coding Homo_sapiens 0 281
ENST00000481767 PFN2-006 protein_coding Homo_sapiens 0 281
ENST00000489155 PFN2-007 protein_coding Homo_sapiens 0 281
ENST00000490975 PFN2-010 protein_coding Homo_sapiens 0 475
ENST00000494827 PFN2-019 protein_coding Homo_sapiens 0 281
ENST00000497060 PFN2-017 retained_intron Homo_sapiens 0 289
ENST00000497148 PFN2-018 protein_coding Homo_sapiens 0 281
ENST00000498169 PFN2-013 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000498307 PFN2-008 protein_coding Homo_sapiens 0 283

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