C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002QZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070087-ENSG00000196428 CGP 9606 3:149964904-150466431
GeneTranscriptPositionBiotype
ENSG00000070087 (PFN2)
profilin 2 		ENST00000239940 (PFN2-001) 149964904-149971109 protein_coding
ENST00000423691 (PFN2-003) 149964913-149970922 protein_coding
ENST00000452853 (PFN2-002) 149964904-149970950 protein_coding
ENST00000460404 (PFN2-004) 149965689-149970904 nonsense_mediated_decay
ENST00000461868 (PFN2-009) 149968154-149970940 protein_coding
ENST00000461930 (PFN2-011) 149968118-149970904 protein_coding
ENST00000468323 (PFN2-012) 149965713-149970898 nonsense_mediated_decay
ENST00000475518 (PFN2-015) 149966260-149970735 protein_coding
ENST00000481275 (PFN2-016) 149966268-149970401 protein_coding
ENST00000481767 (PFN2-006) 149964935-149970715 protein_coding
ENST00000489155 (PFN2-007) 149966316-149971223 protein_coding
ENST00000490975 (PFN2-010) 149966078-149970925 protein_coding
ENST00000494827 (PFN2-019) 149965857-150022811 protein_coding
ENST00000497060 (PFN2-017) 149966053-149968905 retained_intron
ENST00000497148 (PFN2-018) 149966161-150050788 protein_coding
ENST00000498169 (PFN2-013) 149966251-149970882 nonsense_mediated_decay
ENST00000498307 (PFN2-008) 149966285-149971213 protein_coding
ENSG00000182000 (RP11-651P23.2)
 ENST00000487390 (RP11-651P23.2-001) 149984395-149984797 processed_pseudogene
ENSG00000196428 (TSC22D2)
TSC22 domain family, member 2 		ENST00000361875 (TSC22D2-001) 150408335-150466431 protein_coding
ENST00000460316 (TSC22D2-008) 150456951-150459128 retained_intron
ENST00000466814 (TSC22D2-003) 150411009-150460116 protein_coding
ENST00000480589 (TSC22D2-005) 150410969-150458861 protein_coding
ENST00000485421 (TSC22D2-004) 150411179-150458679 nonsense_mediated_decay
ENST00000492828 (TSC22D2-007) 150423039-150423451 processed_transcript
ENSG00000224831 (RP11-651P23.4)
 ENST00000463122 (RP11-651P23.4-001) 149982181-149983308 processed_pseudogene
ENSG00000241048 (RP11-167H9.5)
 ENST00000474444 (RP11-167H9.5-001) 150202174-150225190 lincRNA
ENSG00000241143 (RPL32P9)
ribosomal protein L32 pseudogene 9 		ENST00000487963 (RPL32P9-001) 150150538-150150944 transcribed_processed_pseudogene
ENSG00000241947 (HNRNPA1P24)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 24 		ENST00000476029 (HNRNPA1P24-001) 149999645-150000690 processed_pseudogene
ENSG00000242791 (RP11-651P23.5)
 ENST00000323689 (RP11-651P23.5-001) 149978098-149979355 lincRNA
ENST00000471176 (RP11-651P23.5-002) 149976755-149979328 lincRNA
ENSG00000243321 (RP11-167H9.3)
 ENST00000464673 (RP11-167H9.3-001) 150077494-150080117 lincRNA
ENSG00000243550 (LINC01214)
long intergenic non-protein coding RNA 1214 		ENST00000471222 (LINC01214-001) 150265412-150287373 lincRNA
ENSG00000243944 (RP11-167H9.4)
 ENST00000472821 (RP11-167H9.4-001) 150096443-150150784 antisense
ENST00000487840 (RP11-167H9.4-003) 150039214-150213614 antisense
ENST00000489690 (RP11-167H9.4-002) 150098032-150213726 antisense
ENSG00000244541 (LINC01213)
long intergenic non-protein coding RNA 1213 		ENST00000472890 (LINC01213-002) 150238519-150240203 lincRNA
ENST00000498005 (LINC01213-001) 150238700-150240209 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0002QZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027805-ENSMUSG00000027806 CGP 10090 3:57841895-58466787
GeneTranscriptPositionBiotype
ENSMUSG00000027805 (Pfn2)
profilin 2 		ENSMUST00000066882 (Pfn2-001) 57841895-57847564 protein_coding
ENSMUST00000119344 (Pfn2-002) 57841905-57847145 protein_coding
ENSMUST00000120289 (Pfn2-003) 57844670-57847489 protein_coding
ENSMUST00000122210 (Pfn2-004) 57843108-57845878 protein_coding
ENSMUSG00000027806 (Tsc22d2)
TSC22 domain family, member 2 		ENSMUST00000099090 (Tsc22d2-201) 58415689-58466787 protein_coding
ENSMUSG00000065722 (Gm26166)
predicted gene, 26166 		ENSMUST00000083788 (Gm26166-201) 58290251-58290357 snRNA
ENSMUSG00000069008 (Gm5537)
predicted gene 5537 		ENSMUST00000091117 (Gm5537-201) 58102609-58104269 processed_pseudogene
ENSMUSG00000088570 (Gm24531)
predicted gene, 24531 		ENSMUST00000157945 (Gm24531-201) 57922088-57922187 snRNA
ENSMUSG00000100666 (RP23-375H15.1)
RIKEN cDNA 1700007F19 gene 		ENSMUST00000188418 (RP23-375H15.1-001) 58141707-58163807 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002QZ_0001ENSG00000070087ENST00000239940ENST00000423691ENST00000452853ENST00000460404ENST00000461868ENST00000461930ENST00000468323ENST00000475518ENST00000481275ENST00000481767ENST00000489155ENST00000490975ENST00000494827ENST00000497060ENST00000497148ENST00000498169ENST00000498307ENSG00000182000ENST00000487390ENSG00000196428ENST00000361875ENST00000460316ENST00000466814ENST00000480589ENST00000485421ENST00000492828ENSG00000224831ENST00000463122ENSG00000241048ENST00000474444ENSG00000241143ENST00000487963ENSG00000241947ENST00000476029ENSG00000242791ENST00000323689ENST00000471176ENSG00000243321ENST00000464673ENSG00000243550ENST00000471222ENSG00000243944ENST00000472821ENST00000487840ENST00000489690ENSG00000244541ENST00000472890ENST00000498005CIL_0002QZ_0002ENSMUSG00000027805ENSMUST00000066882ENSMUST00000119344ENSMUST00000120289ENSMUST00000122210ENSMUSG00000027806ENSMUST00000099090ENSMUSG00000065722ENSMUST00000083788ENSMUSG00000069008ENSMUST00000091117ENSMUSG00000088570ENSMUST00000157945ENSMUSG00000100666ENSMUST00000188418
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002QZ_0001ENSG00000070087ENST00000239940ENST00000423691ENST00000452853ENST00000468323ENSG00000182000ENST00000487390ENSG00000196428ENST00000361875ENST00000460316ENST00000466814ENST00000480589ENST00000485421ENSG00000224831ENST00000463122ENSG00000241048ENST00000474444ENSG00000241143ENST00000487963ENSG00000241947ENST00000476029ENSG00000242791ENST00000323689ENST00000471176ENSG00000243321ENST00000464673ENSG00000243550ENST00000471222ENSG00000243944ENST00000472821ENST00000487840ENSG00000244541ENST00000472890ENST00000498005CIL_0002QZ_0002ENSMUSG00000027805ENSMUST00000066882ENSMUST00000119344ENSMUST00000120289ENSMUST00000122210ENSMUSG00000027806ENSMUST00000099090ENSMUSG00000065722ENSMUST00000083788ENSMUSG00000069008ENSMUST00000091117ENSMUSG00000088570ENSMUST00000157945ENSMUSG00000100666ENSMUST00000188418
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070087 ENST00000239940 N/A 3.900±0.00 N/A 66.812±40.77 N/A 6.587±2.54 12.312±0.00 17.896±0.00 N/A 5.513±0.00 26.126±20.26 12.282±3.98 11.866±0.00 10.825±0.21
ENST00000423691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.212±0.00 22.173±0.00 16.168±0.00
ENST00000452853 21.192±0.00 5.095±0.00 4.608±0.00 50.143±0.00 19.458±0.00 15.769±0.00 N/A 30.098±0.00 N/A 11.827±0.00 N/A 18.626±7.57 7.727±2.04 24.536±0.00
ENST00000460404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.397±0.00 N/A 15.835±0.00
ENST00000475518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182000 ENST00000487390 0.068±0.00 N/A N/A 0.036±0.00 0.034±0.00 N/A 0.156±0.00 0.170±0.00 N/A 0.062±0.00 0.180±0.00 0.108±0.02 N/A 0.262±0.00
ENSG00000196428 ENST00000361875 N/A 0.774±0.00 1.293±0.00 2.097±0.46 1.114±0.00 0.934±0.00 0.747±0.38 1.297±0.00 0.678±0.27 1.626±0.00 0.555±0.40 0.839±0.06 0.712±0.39 1.649±0.15
ENST00000460316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.669±0.00 N/A N/A N/A
ENST00000466814 5.395±0.00 5.147±0.00 3.027±0.00 2.334±1.10 5.505±0.79 3.628±0.26 2.827±1.99 4.064±1.99 3.118±0.84 4.140±1.28 1.533±0.85 5.962±0.59 3.941±1.74 10.790±2.02
ENST00000480589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.917±0.00 N/A N/A N/A
ENST00000485421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.070±0.00
ENST00000492828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224831 ENST00000463122 0.130±0.00 0.247±0.00 N/A 0.154±0.00 0.027±0.01 0.036±0.00 0.052±0.03 0.016±0.00 0.027±0.00 0.020±0.01 N/A 0.122±0.04 0.142±0.05 0.104±0.01
ENSG00000241048 ENST00000474444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00
ENSG00000241143 ENST00000487963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 0.199±0.00
ENSG00000241947 ENST00000476029 N/A N/A N/A 0.024±0.00 N/A N/A 0.033±0.00 N/A N/A N/A 0.011±0.00 0.018±0.00 0.018±0.00 N/A
ENSG00000242791 ENST00000323689 N/A 0.095±0.00 N/A N/A 0.239±0.00 0.356±0.00 N/A 0.047±0.00 0.080±0.00 0.211±0.00 0.041±0.00 0.361±0.00 N/A 1.028±0.00
ENST00000471176 N/A N/A N/A 0.113±0.06 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.00
ENSG00000243321 ENST00000464673 0.049±0.00 0.006±0.00 N/A 0.100±0.04 0.030±0.00 N/A 0.012±0.00 0.006±0.00 0.016±0.00 0.011±0.00 0.027±0.00 0.015±0.00 0.056±0.00 0.039±0.00
ENSG00000243550 ENST00000471222 N/A N/A N/A N/A 0.165±0.00 N/A N/A N/A N/A N/A N/A 0.239±0.00 N/A 1.996±0.00
ENSG00000243944 ENST00000472821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A 0.153±0.09
ENST00000487840 N/A N/A N/A 0.097±0.00 N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.155±0.02
ENST00000489690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244541 ENST00000472890 N/A N/A N/A 0.057±0.00 N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000498005 N/A N/A 0.144±0.00 N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A N/A N/A 0.413±0.34
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027805 ENSMUST00000066882 14.856±9.98 23.866±1.74 40.447±7.72 176.007±50.89 8.344±3.84 3.133±0.64 18.078±1.27 25.112±2.08 1.820±0.97 7.443±1.48 78.004±6.32 22.770±5.67 6.050±3.40 54.690±19.13
ENSMUST00000119344 0.721±0.00 N/A N/A N/A 5.840±6.97 N/A 2.241±0.00 N/A 0.211±0.00 0.915±0.00 16.774±2.07 2.230±0.08 N/A N/A
ENSMUST00000120289 N/A N/A N/A 56.810±0.00 N/A N/A N/A N/A 0.344±0.00 N/A N/A N/A 1.738±0.45 N/A
ENSMUST00000122210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.982±0.00 2.743±0.00 99.027±0.00
ENSMUSG00000027806 ENSMUST00000099090 3.330±1.80 10.583±5.71 1.583±0.80 0.854±0.23 6.171±5.65 6.242±0.42 1.333±0.87 2.317±1.81 1.413±0.76 1.920±0.36 1.220±0.22 9.290±5.39 1.236±0.38 2.372±1.73
ENSMUSG00000065722 ENSMUST00000083788 N/A N/A N/A N/A N/A N/A N/A 2440.020±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000069008 ENSMUST00000091117 N/A N/A N/A 4.553±0.00 N/A N/A N/A N/A 8.527±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000088570 ENSMUST00000157945 N/A N/A N/A N/A N/A N/A N/A N/A 62.643±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000100666 ENSMUST00000188418 0.027±0.00 N/A 0.004±0.00 0.005±0.00 N/A N/A N/A 0.066±0.00 0.040±0.02 N/A 0.013±0.00 N/A 0.051±0.00 2.347±0.36

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