C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 9855
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121229 Gm9855-001 ENSMUSG00000085666 10090 - 10:42054113-42055306 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000121229
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000121229 0.041±0.00 0.154±0.05 0.143±0.11 3.595±4.00 0.081±0.00 0.051±0.02 0.050±0.02 0.263±0.26 0.050±0.00 0.033±0.00 3.582±4.51 0.983±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034X CIL_00034X_0002 CGP 10:41914990-42276755
CIL_0008YH CIL_0008YH_0002 VISTA 10:41950904-42552282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266775 TDG-003 protein_coding Homo_sapiens 0 1029
ENST00000392872 TDG-001 protein_coding Homo_sapiens 0 1029
ENST00000537100 TDG-008 protein_coding Homo_sapiens 0 579
ENST00000540956 TDG-006 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000542926 TDG-009 retained_intron Homo_sapiens 0 477
ENST00000543961 TDGP1-001 processed_pseudogene Homo_sapiens 0 968
ENST00000544861 TDG-004 protein_coding Homo_sapiens 0 1022

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