C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thymine-DNA glycosylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544861 TDG-004 ENSG00000139372 9606 + 12:103965845-103987194 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastMuscleENST00000544861
Transcript ID Breast Muscle
ENST00000544861 1.008±0.00 1.070±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000002 CIL_000002_0002 CGP 12:103950202-103988874
CIL_0002S6 CIL_0002S6_0001 CGP 12:103965804-104064183

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0006298 IEA mismatch repair
GO:0016798 IEA hydrolase activity, acting on glycosyl bonds
GO:0030983 IEA mismatched DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151390 Tdg-002 protein_coding Mus_musculus 0 1077
ENSMUST00000092266 Tdg-001 protein_coding Mus_musculus 0 1077
ENSMUST00000051363 Gm5806-201 processed_pseudogene Mus_musculus 0 1066
ENSMUST00000121229 Gm9855-001 processed_pseudogene Mus_musculus 0 1022
ENSMUST00000182353 Gm5597-001 processed_pseudogene Mus_musculus 0 1005
ENSMUST00000176326 Tdg-009 protein_coding Mus_musculus 0 643
ENSMUST00000177353 Tdg-011 protein_coding Mus_musculus 0 571
ENSMUST00000176195 Tdg-010 nonsense_mediated_decay Mus_musculus 0 569
ENSMUST00000125970 Tdg-007 retained_intron Mus_musculus 0 429
ENSMUST00000142658 Tdg-008 retained_intron Mus_musculus 0 313
ENSMUST00000135652 Tdg-006 retained_intron Mus_musculus 0 303

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