C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | thymine-DNA glycosylase | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000537100  |
TDG-008 |
ENSG00000139372 |
9606 | + |
12:103965886-103983389  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000002 | CIL_000002_0002 | CGP | 12:103950202-103988874 |
| CIL_0002S6 | CIL_0002S6_0001 | CGP | 12:103965804-104064183 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005634 | IDA | nucleus |
| GO:0005886 | IDA | plasma membrane |
| GO:0006298 | IEA | mismatch repair |
| GO:0016798 | IEA | hydrolase activity, acting on glycosyl bonds |
| GO:0016799 | IEA | hydrolase activity, hydrolyzing N-glycosyl compounds |
| GO:0030983 | IEA | mismatched DNA binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000121229
|
Gm9855-001 | processed_pseudogene | Mus_musculus | 0 | 579 |
|
ENSMUST00000051363
|
Gm5806-201 | processed_pseudogene | Mus_musculus | 0 | 579 |
|
ENSMUST00000151390
|
Tdg-002 | protein_coding | Mus_musculus | 0 | 579 |
|
ENSMUST00000092266
|
Tdg-001 | protein_coding | Mus_musculus | 0 | 579 |
|
ENSMUST00000182353
|
Gm5597-001 | processed_pseudogene | Mus_musculus | 0 | 577 |
|
ENSMUST00000177353
|
Tdg-011 | protein_coding | Mus_musculus | 0 | 468 |
|
ENSMUST00000135652
|
Tdg-006 | retained_intron | Mus_musculus | 0 | 281 |
|
ENSMUST00000125970
|
Tdg-007 | retained_intron | Mus_musculus | 0 | 250 |
|
ENSMUST00000176326
|
Tdg-009 | protein_coding | Mus_musculus | 0 | 228 |
|
ENSMUST00000176195
|
Tdg-010 | nonsense_mediated_decay | Mus_musculus | 2e-35 | 154 |
