C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12464
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121385 Gm12464-001 ENSMUSG00000081440 10090 + 3:100413560-100414575 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverOvaryPlacentaTestisENSMUST00000121385
Transcript ID Adipose Breast Colon Liver Ovary Placenta Testis
ENSMUST00000121385 0.030±0.00 0.032±0.00 0.068±0.00 0.017±0.01 0.067±0.03 0.027±0.02 0.046±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HM CIL_0008HM_0002 VISTA 3:100137197-100740090
CIL_0008A1 CIL_0008A1_0002 VISTA 3:100182353-100782938

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 946
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 710
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 926
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 946
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 946
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 411
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 706
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 819
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 566
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 684
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 859
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 675
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 468
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 710
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 710
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 673
ENST00000509132 GAPDHP66-001 processed_pseudogene Homo_sapiens 0 459
ENST00000511530 GAPDHP71-001 processed_pseudogene Homo_sapiens 0 695
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 688
ENST00000515281 GAPDHP70-001 processed_pseudogene Homo_sapiens 0 592
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 713
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 625
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 625
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 845

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