C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 6-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122003 Cnot6l-003 ENSMUSG00000034724 10090 - 5:96076801-96161547 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaTestisENSMUST00000122003
Transcript ID Breast Ovary Placenta Testis
ENSMUST00000122003 3.088±1.07 1.555±0.00 7.802±0.00 1.995±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069Y CIL_00069Y_0002 CGP 5:95956928-96164171
CIL_0007HW CIL_0007HW_0003 CGP 5:96070333-96266727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 IMP nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0004535 IMP poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0006417 IEA regulation of translation
GO:0008284 IMP positive regulation of cell proliferation
GO:0010606 ISS positive regulation of cytoplasmic mRNA processing body assembly
GO:0030014 ISS CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:0046872 IEA metal ion binding
GO:0061157 IMP mRNA destabilization
GO:0090503 IMP:IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000076807 cnot6l-001 protein_coding Danio_rerio 0 616
ENSDART00000147121 cnot6l-002 processed_transcript Danio_rerio 2e-38 165
ENST00000504123 CNOT6L-001 protein_coding Homo_sapiens 0 2106
ENST00000504804 CNOT6L-007 nonsense_mediated_decay Homo_sapiens 0 2080
ENST00000505983 CNOT6L-008 protein_coding Homo_sapiens 0 955
ENST00000506166 CNOT6L-003 processed_transcript Homo_sapiens 0 894
ENST00000508371 CNOT6L-009 retained_intron Homo_sapiens 0 538
ENST00000512485 CNOT6L-005 protein_coding Homo_sapiens 0 2108
ENST00000515441 CNOT6L-006 protein_coding Homo_sapiens 0 773
ENST00000515506 CNOT6L-004 protein_coding Homo_sapiens 0 2852
ENST00000559681 CNOT6LP1-001 processed_pseudogene Homo_sapiens 0 1513

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