C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4 (anion exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124341 Slc4a3-001 ENSMUSG00000006576 10090 + 1:75546266-75562172 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungOvaryTestisENSMUST00000124341
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Ovary Testis
ENSMUST00000124341 0.499±0.00 9.857±0.00 0.883±0.00 1.780±0.00 0.828±0.29 0.448±0.00 6.000±1.43 0.087±0.02 1.446±0.09 4.382±0.59 0.775±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592
CIL_0006O3 CIL_0006O3_0002 CGP 1:75521529-75562172
CIL_0008ED CIL_0008ED_0002 VISTA 1:75532718-76135169
CIL_0006O4 CIL_0006O4_0002 CGP 1:75546266-77515088

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 IDA plasma membrane
GO:0006820 IEA anion transport
GO:0015301 IDA anion:anion antiporter activity
GO:0016021 IEA integral component of membrane
GO:0051453 IDA regulation of intracellular pH
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273063 SLC4A3-001 protein_coding Homo_sapiens 0 3627
ENST00000317151 SLC4A3-002 protein_coding Homo_sapiens 0 4392
ENST00000358055 SLC4A3-009 protein_coding Homo_sapiens 0 4394
ENST00000373760 SLC4A3-010 protein_coding Homo_sapiens 0 4466
ENST00000413743 SLC4A3-008 protein_coding Homo_sapiens 0 540
ENST00000416910 SLC4A3-011 nonsense_mediated_decay Homo_sapiens 0 2025
ENST00000425141 SLC4A3-004 nonsense_mediated_decay Homo_sapiens 0 4244
ENST00000444906 SLC4A3-005 nonsense_mediated_decay Homo_sapiens 0 265
ENST00000497589 SLC4A3-003 processed_transcript Homo_sapiens 0 383

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