C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility (minor) 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498035 HM13-013 ENSG00000101294 9606 + 20:31514457-31541733 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000498035
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000498035 0.407±0.00 0.316±0.00 1.098±0.00 0.591±0.00 0.117±0.00 0.565±0.00 1.859±1.12 0.299±0.00 1.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0001 VISTA 20:31303913-31904751
CIL_00089Z CIL_00089Z_0001 VISTA 20:31373735-31977079
CIL_0008N4 CIL_0008N4_0001 VISTA 20:31410024-32010895
CIL_0001A0 CIL_0001A0_0001 CGP 20:31475293-31577923

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004190 IEA aspartic-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005791 IDA rough endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0008233 IDA peptidase activity
GO:0009986 ISS cell surface
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0033619 IDA membrane protein proteolysis
GO:0042500 IMP aspartic endopeptidase activity, intramembrane cleaving
GO:0042803 IDA protein homodimerization activity
GO:0071458 IDA integral component of cytoplasmic side of endoplasmic reticulum membrane
GO:0071556 IDA integral component of lumenal side of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000148156 H13-005 retained_intron Mus_musculus 0 769
ENSMUST00000089059 H13-002 protein_coding Mus_musculus 0 621
ENSMUST00000109825 H13-006 protein_coding Mus_musculus 0 621
ENSMUST00000125366 H13-001 protein_coding Mus_musculus 0 621
ENSMUST00000079247 H13-003 protein_coding Mus_musculus 0 584
ENSDART00000128433 hm13-001 protein_coding Danio_rerio 0 209
ENSMUST00000116286 Stk40-201 protein_coding Mus_musculus 0.00007 55
ENSMUST00000127092 Stk40-002 processed_transcript Mus_musculus 0.00007 55

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