C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility (minor) 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340852 HM13-011 ENSG00000101294 9606 + 20:31514428-31569567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000340852
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000340852 37.959±0.00 51.212±0.00 2.161±0.00 5.545±0.00 21.227±16.16 18.242±15.18 3.235±2.76 38.599±29.43 53.026±50.82 21.476±17.99 63.491±31.73 111.540±24.58 25.929±8.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0001 VISTA 20:31303913-31904751
CIL_00089Z CIL_00089Z_0001 VISTA 20:31373735-31977079
CIL_0008N4 CIL_0008N4_0001 VISTA 20:31410024-32010895
CIL_0001A0 CIL_0001A0_0001 CGP 20:31475293-31577923

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004190 IEA aspartic-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005791 IDA rough endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0008233 IDA peptidase activity
GO:0009986 ISS cell surface
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0033619 IDA membrane protein proteolysis
GO:0042500 IMP aspartic endopeptidase activity, intramembrane cleaving
GO:0042803 IDA protein homodimerization activity
GO:0071458 IDA integral component of cytoplasmic side of endoplasmic reticulum membrane
GO:0071556 IDA integral component of lumenal side of endoplasmic reticulum membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125366 H13-001 protein_coding Mus_musculus 0 1779
ENSMUST00000089059 H13-002 protein_coding Mus_musculus 0 1554
ENSMUST00000079247 H13-003 protein_coding Mus_musculus 0 830
ENSMUST00000109825 H13-006 protein_coding Mus_musculus 0 747
ENSDART00000128433 hm13-001 protein_coding Danio_rerio 0 649
ENSMUST00000148156 H13-005 retained_intron Mus_musculus 0 625
ENSMUST00000129439 H13-004 retained_intron Mus_musculus 1e-34 152

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