C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: histocompatibility (minor) 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344042 HM13-014 ENSG00000101294 9606 + 20:31514521-31561730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartKidneyLiverENST00000344042
Transcript ID Bladder Heart Kidney Liver
ENST00000344042 3.198±0.00 1.415±0.00 9.603±0.00 2.300±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0001 VISTA 20:31303913-31904751
CIL_00089Z CIL_00089Z_0001 VISTA 20:31373735-31977079
CIL_0008N4 CIL_0008N4_0001 VISTA 20:31410024-32010895
CIL_0001A0 CIL_0001A0_0001 CGP 20:31475293-31577923

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004190 IEA aspartic-type endopeptidase activity
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079247 H13-003 protein_coding Mus_musculus 0 1219
ENSMUST00000089059 H13-002 protein_coding Mus_musculus 0 817
ENSMUST00000125366 H13-001 protein_coding Mus_musculus 0 817
ENSMUST00000109825 H13-006 protein_coding Mus_musculus 0 697
ENSMUST00000148156 H13-005 retained_intron Mus_musculus 0 571
ENSDART00000128433 hm13-001 protein_coding Danio_rerio 0 289
ENSMUST00000129439 H13-004 retained_intron Mus_musculus 2e-34 150

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