C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125834 Arhgef39-004 ENSMUSG00000051517 10090 - 4:43496524-43499661 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125834
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125834 1.009±0.75 0.882±0.32 2.741±1.15 4.272±2.66 0.385±0.15 11.138±2.75 0.219±0.05 3.037±1.04 5.970±6.12 0.663±0.39 0.171±0.00 4.650±1.78 1.534±1.02 2.708±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072N CIL_00072N_0002 CGP 4:43492900-43499695
CIL_00072O CIL_00072O_0002 CGP 4:43496142-43513729

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378387 ARHGEF39-001 protein_coding Homo_sapiens 0 664
ENST00000468876 ARHGEF39-006 processed_transcript Homo_sapiens 0 385
ENST00000475323 ARHGEF39-003 nonsense_mediated_decay Homo_sapiens 0 545
ENST00000490638 ARHGEF39-004 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000490970 ARHGEF39-002 processed_transcript Homo_sapiens 0 329

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