C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sorting nexin 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369627 SNX14-008 ENSG00000135317 9606 - 6:85505802-85593850 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyOvaryTestisENST00000369627
Transcript ID Bladder Kidney Ovary Testis
ENST00000369627 3.293±0.00 5.719±0.00 6.378±0.00 12.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K0 CIL_0007K0_0001 UCNEbase 6:84361462-85614404
CIL_0007TL CIL_0007TL_0001 VISTA 6:84971170-85574346
CIL_0006BN CIL_0006BN_0002 CGP 6:85449584-85594156
CIL_0005XI CIL_0005XI_0001 CGP 6:85505496-85615234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008277 IEA regulation of G-protein coupled receptor protein signaling pathway
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165315 Snx14-001 protein_coding Mus_musculus 0 3677
ENSMUST00000174806 Snx14-006 protein_coding Mus_musculus 0 3563
ENSMUST00000173039 Snx14-005 protein_coding Mus_musculus 0 2977
ENSMUST00000126405 Snx14-003 nonsense_mediated_decay Mus_musculus 0 2357
ENSMUST00000140439 Snx14-002 retained_intron Mus_musculus 0 1773
ENSMUST00000173011 Snx14-007 protein_coding Mus_musculus 0 1670
ENSMUST00000173131 Gm20537-001 nonsense_mediated_decay Mus_musculus 0 754
ENSMUST00000126563 Snx14-004 retained_intron Mus_musculus 0 542
ENSMUST00000154586 Gm20537-002 nonsense_mediated_decay Mus_musculus 0 281

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