C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128754 Arhgef39-002 ENSMUSG00000051517 10090 - 4:43496146-43499619 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000128754
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000128754 0.211±0.18 1.172±0.43 3.197±0.00 0.182±0.00 3.953±0.66 0.098±0.00 1.028±0.34 2.207±2.19 0.041±0.00 1.401±0.98 0.860±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072N CIL_00072N_0002 CGP 4:43492900-43499695
CIL_00072O CIL_00072O_0002 CGP 4:43496142-43513729

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378387 ARHGEF39-001 protein_coding Homo_sapiens 0 326
ENST00000468876 ARHGEF39-006 processed_transcript Homo_sapiens 0 475
ENST00000475323 ARHGEF39-003 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000490638 ARHGEF39-004 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000490970 ARHGEF39-002 processed_transcript Homo_sapiens 0 326

Loading