C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129306 Fscn1-002 ENSMUSG00000029581 10090 + 5:142960843-142972170 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyMuscleOvaryPlacentaTestisENSMUST00000129306
Transcript ID Adipose Breast Heart Kidney Muscle Ovary Placenta Testis
ENSMUST00000129306 27.502±3.64 6.518±0.00 7.817±0.45 4.570±0.42 1.972±0.00 33.137±11.47 99.574±49.44 3.136±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_0002V8 CIL_0002V8_0002 CGP 5:142903115-142973185
CIL_00027J CIL_00027J_0003 CGP 5:142960343-143113020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0030175 IDA filopodium
GO:0030674 IEA protein binding, bridging
GO:0051015 IMP actin filament binding
GO:0051017 IDA actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382361 FSCN1-001 protein_coding Homo_sapiens 0 889
ENST00000405801 FSCN1-005 protein_coding Homo_sapiens 0 527
ENST00000444748 FSCN1-003 protein_coding Homo_sapiens 0 514
ENST00000447103 FSCN1-004 protein_coding Homo_sapiens 0 468
ENST00000473330 FSCN1-002 retained_intron Homo_sapiens 0 806
ENST00000568912 FSCN1P1-001 processed_pseudogene Homo_sapiens 0 747

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