C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phenylalanyl-tRNA synthetase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129595 Farsa-005 ENSMUSG00000003808 10090 + 8:84856995-84869256 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129595 5.228±1.71 9.283±0.89 4.478±0.64 7.658±1.72 6.990±1.31 6.064±0.88 1.902±0.24 3.535±0.50 5.304±2.49 4.855±0.87 2.401±0.51 8.589±2.37 6.494±1.10 4.436±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0006LV CIL_0006LV_0002 CGP 8:84856989-84888221

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314606 FARSA-001 protein_coding Homo_sapiens 0 1109
ENST00000423140 FARSA-002 protein_coding Homo_sapiens 0 532
ENST00000586146 FARSA-004 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000586280 FARSA-009 retained_intron Homo_sapiens 0 536
ENST00000587488 FARSA-010 protein_coding Homo_sapiens 0 327
ENST00000587981 FARSA-007 protein_coding Homo_sapiens 0 433
ENST00000588025 FARSA-006 protein_coding Homo_sapiens 0 1099
ENST00000588965 FARSA-003 retained_intron Homo_sapiens 0 1570
ENST00000592662 FARSA-008 retained_intron Homo_sapiens 0 758
ENST00000593021 FARSA-005 protein_coding Homo_sapiens 0 678

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