C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000132929 Rbm39-007 ENSMUSG00000027620 10090 - 2:156177161-156180196 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryENSMUST00000132929
Transcript ID Adrenal Breast Colon Lung Ovary
ENSMUST00000132929 32.116±8.97 21.000±0.25 12.335±2.27 17.208±3.78 17.495±3.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0000WY CIL_0000WY_0002 CGP 2:156144039-156180238
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253363 RBM39-002 protein_coding Homo_sapiens 4e-20 104
ENST00000338163 RBM39-008 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000361162 RBM39-001 protein_coding Homo_sapiens 0 377
ENST00000374038 RBM39-020 protein_coding Homo_sapiens 0 361
ENST00000397370 RBM39-013 protein_coding Homo_sapiens 0 340
ENST00000403542 RBM39-006 nonsense_mediated_decay Homo_sapiens 0 595
ENST00000412738 RBM39-017 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000416108 RBM39-043 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000416529 RBM39-024 nonsense_mediated_decay Homo_sapiens 5e-24 115
ENST00000425184 RBM39-021 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000429968 RBM39-005 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000433027 RBM39-045 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000434927 RBM39-018 protein_coding Homo_sapiens 6e-19 99
ENST00000442447 RBM39-016 processed_transcript Homo_sapiens 0 254
ENST00000444878 RBM39-007 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000449489 RBM39-044 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000453310 RBM39-012 nonsense_mediated_decay Homo_sapiens 0 577
ENST00000455343 RBM39-019 nonsense_mediated_decay Homo_sapiens 0 322
ENST00000461849 RBM39-014 retained_intron Homo_sapiens 0 477
ENST00000463004 RBM39-004 retained_intron Homo_sapiens 0 340
ENST00000463098 RBM39-003 processed_transcript Homo_sapiens 0 470
ENST00000493853 RBM39-042 retained_intron Homo_sapiens 7e-32 141
ENST00000528062 RBM39-015 protein_coding Homo_sapiens 0 340

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