C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 39 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318006 VPS39-001 ENSG00000166887 9606 - 15:42158701-42208316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000318006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000318006 12.321±0.00 13.274±0.00 2.939±0.00 12.455±5.32 9.045±6.31 5.942±3.13 7.030±5.25 11.872±0.00 3.513±0.43 4.551±0.78 7.717±5.87 9.685±2.52 13.407±1.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PN CIL_0005PN_0001 CGP 15:42139034-42208316
CIL_0005PM CIL_0005PM_0001 CGP 15:42158701-42273663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030897 IDA HOPS complex
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028752 Vps39-002 protein_coding Mus_musculus 0 3707
ENSMUST00000129857 Vps39-003 processed_transcript Mus_musculus 0 3513
ENSMUST00000102501 Vps39-001 protein_coding Mus_musculus 0 3511
ENSMUST00000147085 Vps39-004 retained_intron Mus_musculus 0 1892
ENSDART00000113644 vps39-201 protein_coding Danio_rerio 0 1430
ENSDART00000156303 vps39-001 protein_coding Danio_rerio 0 1363
ENSMUST00000138854 Vps39-008 processed_transcript Mus_musculus 0 758
ENSMUST00000132476 Vps39-009 retained_intron Mus_musculus 0 424
ENSMUST00000145193 Vps39-005 retained_intron Mus_musculus 0 387
ENSMUST00000156296 Vps39-006 processed_transcript Mus_musculus 0 340
ENSMUST00000133260 Vps39-010 retained_intron Mus_musculus 0 248
ENSMUST00000126526 Vps39-007 processed_transcript Mus_musculus 0 200

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