C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133788 Ccdc40-005 ENSMUSG00000039963 10090 + 11:119253553-119264436 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyENSMUST00000133788
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney
ENSMUST00000133788 0.144±0.07 0.173±0.00 0.170±0.00 0.097±0.04 0.138±0.01 0.147±0.00 0.075±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000040 CIL_000040_0002 CGP 11:119143045-119265236
CIL_00003V CIL_00003V_0002 CGP 11:119228572-119285454

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397545 CCDC40-001 protein_coding Homo_sapiens 0 403
ENST00000572253 CCDC40-005 retained_intron Homo_sapiens 0 370
ENST00000574799 CCDC40-004 retained_intron Homo_sapiens 0 403
ENST00000575431 CCDC40-013 retained_intron Homo_sapiens 0 270

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