C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, nuclear 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557702 PABPN1-006 ENSG00000100836 9606 + 14:23322022-23324378 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000557702
Transcript ID Testis
ENST00000557702 135.725±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0001 VISTA 14:23078458-23681621
CIL_0009BW CIL_0009BW_0001 VISTA 14:23137378-23739005
CIL_0008Q4 CIL_0008Q4_0001 VISTA 14:23138150-23738498
CIL_0008QH CIL_0008QH_0001 VISTA 14:23142404-23743714
CIL_00051H CIL_00051H_0001 CGP 14:23298790-23325369
CIL_00051J CIL_00051J_0001 CGP 14:23306835-23326185
CIL_00051C CIL_00051C_0001 CGP 14:23321289-23352912

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139985 Pabpn1-006 protein_coding Mus_musculus 0 909
ENSMUST00000141446 Pabpn1-005 protein_coding Mus_musculus 0 870
ENSMUST00000116476 Pabpn1-003 protein_coding Mus_musculus 0 869
ENSMUST00000172557 Pabpn1-009 protein_coding Mus_musculus 0 797
ENSMUST00000134077 Gm20521-001 protein_coding Mus_musculus 0 795
ENSMUST00000172695 Pabpn1-008 nonsense_mediated_decay Mus_musculus 0 795
ENSMUST00000022808 Pabpn1-001 protein_coding Mus_musculus 0 795
ENSMUST00000140691 Pabpn1-004 protein_coding Mus_musculus 0 667
ENSMUST00000150975 Pabpn1-002 protein_coding Mus_musculus 0 582
ENSMUST00000146271 Pabpn1-007 protein_coding Mus_musculus 0 215

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