C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, nuclear 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397276 PABPN1-003 ENSG00000100836 9606 + 14:23321457-23326163 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000397276
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000397276 22.282±0.00 3.726±0.00 9.664±6.08 3.260±0.00 13.438±11.52 6.241±0.00 9.924±7.61 24.746±4.52 13.609±3.46 76.311±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090C CIL_00090C_0001 VISTA 14:23078458-23681621
CIL_0009BW CIL_0009BW_0001 VISTA 14:23137378-23739005
CIL_0008Q4 CIL_0008Q4_0001 VISTA 14:23138150-23738498
CIL_0008QH CIL_0008QH_0001 VISTA 14:23142404-23743714
CIL_00051H CIL_00051H_0001 CGP 14:23298790-23325369
CIL_00051J CIL_00051J_0001 CGP 14:23306835-23326185
CIL_00051C CIL_00051C_0001 CGP 14:23321289-23352912

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006396 TAS RNA processing
GO:0006936 TAS muscle contraction
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016973 IMP poly(A)+ mRNA export from nucleus
GO:0019048 TAS modulation by virus of host morphology or physiology
GO:0019054 TAS modulation by virus of host process
GO:0019058 TAS viral life cycle
GO:0030529 IDA ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0046778 TAS modification by virus of host mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116476 Pabpn1-003 protein_coding Mus_musculus 0 1382
ENSMUST00000022808 Pabpn1-001 protein_coding Mus_musculus 0 1295
ENSMUST00000150975 Pabpn1-002 protein_coding Mus_musculus 0 1070
ENSMUST00000172695 Pabpn1-008 nonsense_mediated_decay Mus_musculus 0 924
ENSMUST00000141446 Pabpn1-005 protein_coding Mus_musculus 0 881
ENSMUST00000139985 Pabpn1-006 protein_coding Mus_musculus 0 869
ENSMUST00000134077 Gm20521-001 protein_coding Mus_musculus 0 795
ENSMUST00000172557 Pabpn1-009 protein_coding Mus_musculus 0 795
ENSMUST00000140691 Pabpn1-004 protein_coding Mus_musculus 0 665
ENSMUST00000146271 Pabpn1-007 protein_coding Mus_musculus 0 215

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