C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135009 Col12a1-003 ENSMUSG00000032332 10090 - 9:79598991-79612970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000135009
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000135009 1.226±0.08 2.410±0.30 41.586±0.00 2.641±1.32 1.836±0.50 10.624±0.50 0.295±0.04 2.021±0.17 0.736±0.34 6.045±1.30 1.135±0.38 5.392±1.18 7.091±4.08 1.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061X CIL_00061X_0003 CGP 9:78615546-79718831
CIL_000624 CIL_000624_0004 CGP 9:79598991-79759853

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000025926 col12a1b-201 protein_coding Danio_rerio 3e-25 121
ENSDART00000154728 col12a1a-001 protein_coding Danio_rerio 5e-18 97
ENST00000322507 COL12A1-001 protein_coding Homo_sapiens 0 983
ENST00000345356 COL12A1-002 protein_coding Homo_sapiens 0 983
ENST00000416123 COL12A1-009 protein_coding Homo_sapiens 0 983
ENST00000425443 COL12A1-008 protein_coding Homo_sapiens 0 1607
ENST00000483888 COL12A1-003 protein_coding Homo_sapiens 0 922
ENST00000511023 COL12A1-010 processed_transcript Homo_sapiens 0 640
ENST00000611354 COL12A1-201 protein_coding Homo_sapiens 0 983
ENST00000615798 COL12A1-202 protein_coding Homo_sapiens 0 983

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