C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135293 Fscn1-006 ENSMUSG00000029581 10090 + 5:142970085-142971989 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000135293
Transcript ID Ovary Placenta Testis
ENSMUST00000135293 122.839±0.00 84.851±0.00 2.796±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_0002V8 CIL_0002V8_0002 CGP 5:142903115-142973185
CIL_00027J CIL_00027J_0003 CGP 5:142960343-143113020

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382361 FSCN1-001 protein_coding Homo_sapiens 0 483
ENST00000405801 FSCN1-005 protein_coding Homo_sapiens 0 329
ENST00000444748 FSCN1-003 protein_coding Homo_sapiens 0 316
ENST00000447103 FSCN1-004 protein_coding Homo_sapiens 0 270
ENST00000473330 FSCN1-002 retained_intron Homo_sapiens 0 483
ENST00000568912 FSCN1P1-001 processed_pseudogene Homo_sapiens 0 396

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