C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135416 Casc4-006 ENSMUSG00000060227 10090 + 2:121867130-121906206 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000135416
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000135416 5.881±4.04 29.761±9.63 3.091±1.45 5.219±1.60 1.142±0.00 5.364±1.12 0.329±0.10 24.269±6.12 19.676±4.35 8.136±1.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299957 CASC4-001 protein_coding Homo_sapiens 0 957
ENST00000345795 CASC4-002 protein_coding Homo_sapiens 0 957
ENST00000429162 CASC4-004 processed_transcript Homo_sapiens 0 488
ENST00000456608 CASC4P1-001 processed_pseudogene Homo_sapiens 0 843
ENST00000557945 CASC4-005 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000558735 CASC4-007 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000559222 CASC4-006 protein_coding Homo_sapiens 0 728

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