C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cancer susceptibility candidate 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060227 Casc4 10090 + 2:121866970-121936220 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078752 Casc4-001 121866970-121936220 protein_coding
  ENSMUST00000089912 Casc4-002 121867130-121935866 protein_coding
  ENSMUST00000089915 Casc4-003 121867130-121935907 protein_coding
  ENSMUST00000110586 Casc4-201 121866970-121936205 protein_coding
  ENSMUST00000126256 Casc4-004 121867705-121933697 processed_transcript
  ENSMUST00000127475 Casc4-005 121867129-121900208 retained_intron
  ENSMUST00000135416 Casc4-006 121867130-121906206 retained_intron
  ENSMUST00000136023 Casc4-007 121898807-121933662 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078752ENSMUST00000089912ENSMUST00000089915ENSMUST00000110586ENSMUST00000126256ENSMUST00000135416ENSMUST00000136023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078752 3.099±0.17 N/A 3.053±0.78 5.337±1.39 0.923±0.68 1.367±0.50 0.872±0.22 2.822±1.16 1.603±0.91 7.265±1.12 1.318±0.11 4.224±1.74 1.913±0.83 5.660±1.02
ENSMUST00000089912 0.342±0.04 N/A 1.144±0.00 7.144±3.09 N/A 1.374±0.00 0.784±0.00 2.026±0.75 0.722±0.00 4.097±1.32 0.368±0.15 4.221±0.41 0.905±0.21 3.100±0.36
ENSMUST00000089915 N/A N/A N/A N/A N/A 1.262±0.00 0.242±0.00 N/A 0.294±0.00 N/A N/A 6.195±0.00 N/A N/A
ENSMUST00000110586 1.616±1.27 8.305±1.81 1.195±0.34 3.498±0.06 1.027±0.31 3.290±1.88 0.320±0.01 3.913±0.70 1.029±0.66 3.221±0.81 0.178±0.00 10.677±2.81 2.773±1.05 1.834±0.13
ENSMUST00000126256 N/A N/A N/A 8.929±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135416 5.881±4.04 29.761±9.63 N/A N/A 3.091±1.45 5.219±1.60 1.142±0.00 5.364±1.12 0.329±0.10 24.269±6.12 N/A 19.676±4.35 N/A 8.136±1.87
ENSMUST00000136023 N/A N/A N/A 15.670±0.00 N/A N/A N/A N/A N/A N/A N/A 14.170±2.64 4.284±0.33 16.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074490 casc4 cancer susceptibility candidate 4 protein_coding Danio_rerio
ENSG00000166734 CASC4 cancer susceptibility candidate 4 protein_coding Homo_sapiens

Loading