C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000345795 CASC4-002 ENSG00000166734 9606 + 15:44288760-44415757 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungOvaryPlacentaTestisENST00000345795
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000345795 5.695±0.00 6.413±0.00 7.236±2.45 7.029±0.00 2.341±0.00 2.582±0.00 6.959±0.00 6.368±2.42 4.101±0.96 8.763±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0001 CGP 15:43870761-44415758
CIL_0004QJ CIL_0004QJ_0002 CGP 15:44288729-44529038

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110586 Casc4-201 protein_coding Mus_musculus 0 1764
ENSMUST00000078752 Casc4-001 protein_coding Mus_musculus 0 1339
ENSMUST00000089915 Casc4-003 protein_coding Mus_musculus 0 1059
ENSMUST00000089912 Casc4-002 protein_coding Mus_musculus 0 1059
ENSMUST00000136023 Casc4-007 protein_coding Mus_musculus 0 1022
ENSMUST00000135416 Casc4-006 retained_intron Mus_musculus 0 957
ENSMUST00000126256 Casc4-004 processed_transcript Mus_musculus 0 856
ENSMUST00000127475 Casc4-005 retained_intron Mus_musculus 0 573

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