C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 4 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456608 CASC4P1-001 ENSG00000238132 9606 - 13:19563589-19564900 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartOvaryPlacentaTestisENST00000456608
Transcript ID Adipose Adrenal Brain Breast Heart Ovary Placenta Testis
ENST00000456608 0.040±0.00 0.115±0.00 0.031±0.01 0.200±0.14 0.009±0.00 0.162±0.09 0.014±0.00 0.540±0.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078752 Casc4-001 protein_coding Mus_musculus 0 1511
ENSMUST00000110586 Casc4-201 protein_coding Mus_musculus 0 1173
ENSMUST00000126256 Casc4-004 processed_transcript Mus_musculus 0 1112
ENSMUST00000089915 Casc4-003 protein_coding Mus_musculus 0 933
ENSMUST00000089912 Casc4-002 protein_coding Mus_musculus 0 933
ENSMUST00000135416 Casc4-006 retained_intron Mus_musculus 0 843
ENSMUST00000136023 Casc4-007 protein_coding Mus_musculus 0 763
ENSMUST00000127475 Casc4-005 retained_intron Mus_musculus 0 483

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