C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 80
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000136176 Ift80-004 ENSMUSG00000027778 10090 - 3:68893645-68920105 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverPlacentaTestisENSMUST00000136176
Transcript ID Liver Placenta Testis
ENSMUST00000136176 0.203±0.00 1.109±0.00 5.126±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JR CIL_0004JR_0003 CGP 3:68892499-69034623

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326448 IFT80-001 protein_coding Homo_sapiens 0 1184
ENST00000463240 IFT80-027 processed_transcript Homo_sapiens 0 285
ENST00000478278 IFT80-028 retained_intron Homo_sapiens 0 289
ENST00000483465 IFT80-004 protein_coding Homo_sapiens 0 1184
ENST00000483754 RP11-432B6.3-001 nonsense_mediated_decay Homo_sapiens 0 1184
ENST00000487943 IFT80-003 retained_intron Homo_sapiens 0 1184
ENST00000496589 IFT80-002 protein_coding Homo_sapiens 0 1184
ENST00000558038 RP11-390M11.1-001 processed_pseudogene Homo_sapiens 0 451

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