C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 16288
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000137940 Gm16288-001 ENSMUSG00000085099 10090 - 5:30240082-30240448 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000137940
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000137940 0.563±0.00 0.656±0.00 0.152±0.01 0.309±0.00 1.200±0.64 0.542±0.00 0.185±0.00 0.197±0.01 0.403±0.15 0.360±0.10 0.103±0.00 0.466±0.21 0.317±0.14 0.703±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DM CIL_0007DM_0002 CGP 5:30193431-30272012
CIL_0007DL CIL_0007DL_0002 CGP 5:30232581-30366708

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000404787 RP1-140K8.2-001 processed_pseudogene Homo_sapiens 0 305
ENST00000427600 RP11-543B16.1-001 processed_pseudogene Homo_sapiens 0 300
ENST00000469891 CTD-2287O16.1-001 processed_pseudogene Homo_sapiens 0 351
ENST00000476147 RP11-587D21.1-001 processed_pseudogene Homo_sapiens 0 353
ENST00000524864 RPS25-002 retained_intron Homo_sapiens 0 206
ENST00000527673 RPS25-001 protein_coding Homo_sapiens 0 366
ENST00000527791 RPS25-003 nonsense_mediated_decay Homo_sapiens 0 195
ENST00000527853 RPS25-008 retained_intron Homo_sapiens 0 291
ENST00000532567 RPS25-005 nonsense_mediated_decay Homo_sapiens 0 289

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