C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musashi RNA-binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138790 Msi2-002 ENSMUSG00000069769 10090 - 11:88477964-88718110 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DL CIL_0009DL_0002 VISTA 11:87880548-88481652
CIL_0009DM CIL_0009DM_0002 VISTA 11:87974079-88576075
CIL_0007PL CIL_0007PL_0002 UCNEbase 11:88049942-88585488
CIL_0007R8 CIL_0007R8_0002 VISTA 11:88167358-88768721
CIL_0008GV CIL_0008GV_0002 VISTA 11:88227850-88829479
CIL_000880 CIL_000880_0002 VISTA 11:88254791-88855816
CIL_00039S CIL_00039S_0002 CGP 11:88339382-88864586

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099473 msi2a-201 protein_coding Danio_rerio 0 388
ENSDART00000132096 msi2a-001 protein_coding Danio_rerio 0 388
ENSDART00000135642 msi2a-002 retained_intron Danio_rerio 0 348
ENSDART00000134104 msi2a-004 retained_intron Danio_rerio 0 326
ENSDART00000141183 msi2a-003 retained_intron Danio_rerio 0 228
ENST00000284073 MSI2-001 protein_coding Homo_sapiens 0 767
ENST00000322684 MSI2-003 protein_coding Homo_sapiens 0 634
ENST00000416426 MSI2-002 protein_coding Homo_sapiens 0 632
ENST00000579483 MSI2-004 retained_intron Homo_sapiens 0.0000000009 71
ENST00000579531 MSI2-019 processed_transcript Homo_sapiens 0 442
ENST00000579590 MSI2-009 protein_coding Homo_sapiens 0 579
ENST00000581523 MSI2-018 processed_transcript Homo_sapiens 0 549
ENST00000581776 MSI2-008 nonsense_mediated_decay Homo_sapiens 0 484
ENST00000582453 MSI2-014 processed_transcript Homo_sapiens 0 689
ENST00000584476 MSI2-010 retained_intron Homo_sapiens 0 392

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