C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: abl-interactor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140164 Abi1-001 ENSMUSG00000058835 10090 - 2:22940073-23040241 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000140164
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000140164 7.698±1.13 5.020±0.91 5.621±0.08 9.135±1.37 2.184±0.00 5.598±0.57 6.071±1.23 7.891±0.44 6.410±1.10 6.329±0.89 2.126±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R4 CIL_0000R4_0002 CGP 2:22774094-22940266
CIL_0000R7 CIL_0000R7_0002 CGP 2:22895522-23040241
CIL_0000QC CIL_0000QC_0002 CGP 2:22940073-23114510

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001756 IMP somitogenesis
GO:0005515 IPI protein binding
GO:0005622 ISA intracellular
GO:0005634 IEA nucleus
GO:0005856 IEA cytoskeleton
GO:0009987 IDA cellular process
GO:0018108 ISA peptidyl-tyrosine phosphorylation
GO:0030027 IDA lamellipodium
GO:0030054 IEA cell junction
GO:0030296 IDA protein tyrosine kinase activator activity
GO:0031252 IDA cell leading edge
GO:0035855 IMP megakaryocyte development
GO:0043005 IDA neuron projection
GO:0045211 IEA postsynaptic membrane
GO:0061098 IEA positive regulation of protein tyrosine kinase activity
GO:0072673 IMP lamellipodium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346832 ABI1-201 protein_coding Homo_sapiens 0 1081
ENST00000359188 ABI1-007 protein_coding Homo_sapiens 0 2606
ENST00000376137 ABI1-202 protein_coding Homo_sapiens 0 1218
ENST00000376138 ABI1-001 protein_coding Homo_sapiens 0 1472
ENST00000376139 ABI1-009 protein_coding Homo_sapiens 0 2662
ENST00000376140 ABI1-006 protein_coding Homo_sapiens 0 1965
ENST00000376142 ABI1-005 protein_coding Homo_sapiens 0 1478
ENST00000376160 ABI1-004 protein_coding Homo_sapiens 0 2675
ENST00000376166 ABI1-003 protein_coding Homo_sapiens 0 1485
ENST00000376170 ABI1-002 protein_coding Homo_sapiens 0 1371
ENST00000376215 PDSS1-001 protein_coding Homo_sapiens 0 200
ENST00000470978 PDSS1-003 processed_transcript Homo_sapiens 2.00386e-43 180
ENST00000473481 ABI1-008 processed_transcript Homo_sapiens 0 483
ENST00000490841 ABI1-203 protein_coding Homo_sapiens 0 1079
ENST00000536334 ABI1-204 protein_coding Homo_sapiens 0 1218
ENST00000603375 RP11-132J14.3-001 unprocessed_pseudogene Homo_sapiens 0 508

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