C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prenyl (decaprenyl) diphosphate synthase, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376215 PDSS1-001 ENSG00000148459 9606 + 10:26697659-26746798 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverMuscleOvaryENST00000376215
Transcript ID Kidney Liver Muscle Ovary
ENST00000376215 2.314±0.00 2.416±0.00 2.281±0.00 9.984±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R4 CIL_0000R4_0001 CGP 10:26438203-26746798
CIL_0000R7 CIL_0000R7_0001 CGP 10:26697659-26861087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000010 IDA trans-hexaprenyltranstransferase activity
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006744 IEA ubiquinone biosynthetic process
GO:0008299 IDA:IEA isoprenoid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0046982 IDA protein heterodimerization activity
GO:0050347 IEA trans-octaprenyltranstransferase activity
GO:0051290 IEA protein heterotetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053729 Pdss1-001 protein_coding Mus_musculus 0 1570
ENSMUST00000152170 Pdss1-002 protein_coding Mus_musculus 0 758
ENSMUST00000139472 Pdss1-003 retained_intron Mus_musculus 0 569
ENSMUST00000149229 Pdss1-007 nonsense_mediated_decay Mus_musculus 0 438
ENSMUST00000126112 Abi1-003 protein_coding Mus_musculus 0 200
ENSMUST00000149719 Abi1-002 protein_coding Mus_musculus 0 200
ENSMUST00000140164 Abi1-001 protein_coding Mus_musculus 0 200

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