C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: abl-interactor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376138 ABI1-001 ENSG00000136754 9606 - 10:26746593-26861030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyOvaryENST00000376138
Transcript ID Breast Kidney Ovary
ENST00000376138 2.333±0.00 2.910±0.00 1.881±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R4 CIL_0000R4_0001 CGP 10:26438203-26746798
CIL_0000R7 CIL_0000R7_0001 CGP 10:26697659-26861087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005783 TAS endoplasmic reticulum
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0006928 IDA cellular component movement
GO:0007169 TAS transmembrane receptor protein tyrosine kinase signaling pathway
GO:0008092 TAS cytoskeletal protein binding
GO:0008154 NAS actin polymerization or depolymerization
GO:0008285 TAS negative regulation of cell proliferation
GO:0018108 IDA peptidyl-tyrosine phosphorylation
GO:0030027 IDA lamellipodium
GO:0030054 IEA cell junction
GO:0030175 IDA filopodium
GO:0031209 IDA SCAR complex
GO:0032403 IDA protein complex binding
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0045087 TAS innate immune response
GO:0045211 IEA postsynaptic membrane
GO:0061098 IEA positive regulation of protein tyrosine kinase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078977 Abi1-009 protein_coding Mus_musculus 0 2639
ENSMUST00000093171 Abi1-010 protein_coding Mus_musculus 0 2551
ENSMUST00000149719 Abi1-002 protein_coding Mus_musculus 0 2545
ENSMUST00000178908 Abi1-201 protein_coding Mus_musculus 0 1500
ENSMUST00000123948 Abi1-004 protein_coding Mus_musculus 0 1485
ENSMUST00000091394 Abi1-005 protein_coding Mus_musculus 0 1478
ENSMUST00000140164 Abi1-001 protein_coding Mus_musculus 0 1472
ENSMUST00000126112 Abi1-003 protein_coding Mus_musculus 0 1448
ENSMUST00000139038 Abi1-011 protein_coding Mus_musculus 0 1245
ENSMUST00000153931 Abi1-007 protein_coding Mus_musculus 0 1197
ENSMUST00000114544 Abi1-006 protein_coding Mus_musculus 0 1162
ENSMUST00000156344 Abi1-013 retained_intron Mus_musculus 0 673
ENSMUST00000154162 Abi1-012 retained_intron Mus_musculus 0 667
ENSMUST00000135308 Abi1-015 retained_intron Mus_musculus 0 590
ENSMUST00000148294 Abi1-014 retained_intron Mus_musculus 0 584
ENSMUST00000053729 Pdss1-001 protein_coding Mus_musculus 0 200
ENSMUST00000139472 Pdss1-003 retained_intron Mus_musculus 2.99878e-43 182
ENSMUST00000149229 Pdss1-007 nonsense_mediated_decay Mus_musculus 8e-39 167

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