C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141483 Col1a2-005 ENSMUSG00000029661 10090 + 6:4504814-4516419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLiverOvaryENSMUST00000141483
Transcript ID Adrenal Colon Heart Kidney Liver Ovary
ENSMUST00000141483 27.895±4.23 48.306±0.00 25.359±0.00 19.781±2.64 2.709±0.70 289.930±48.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DY CIL_0006DY_0002 CGP 6:4076899-4541543
CIL_00082O CIL_00082O_0002 VISTA 6:4156170-4759324
CIL_0007XR CIL_0007XR_0002 VISTA 6:4183463-4785322
CIL_00095G CIL_00095G_0002 VISTA 6:4188993-4790635
CIL_0008ZR CIL_0008ZR_0002 VISTA 6:4253537-4855066
CIL_0004SO CIL_0004SO_0003 CGP 6:4504814-4643381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005581 IDA collagen trimer
GO:0005584 IDA collagen type I trimer
GO:0046332 IPI SMAD binding
GO:0070208 IDA protein heterotrimerization
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297268 COL1A2-001 protein_coding Homo_sapiens 0 756
ENST00000620463 COL1A2-201 protein_coding Homo_sapiens 0 708

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