C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type IX, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141603 Scn9a-003 ENSMUSG00000075316 10090 - 2:66564634-66634962 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000141603
Transcript ID Muscle
ENSMUST00000141603 0.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CK CIL_0006CK_0002 CGP 2:66270781-66634962
CIL_0006CV CIL_0006CV_0002 CGP 2:66480080-66784914

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 1e-21 111
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 9e-27 128
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 1e-21 111
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 9e-27 128
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 6e-27 128
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 7e-22 111
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 9e-27 128
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 4e-22 111
ENST00000453007 SCN3A-003 protein_coding Homo_sapiens 1e-22 111
ENST00000507401 SCN1A-007 retained_intron Homo_sapiens 7e-28 128

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