C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type I, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507401 SCN1A-007 ENSG00000144285 9606 - 2:166073302-166128013 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CL CIL_0006CL_0001 CGP 2:165857475-166128013
CIL_0006CK CIL_0006CK_0001 CGP 2:165989160-166375993

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129508 Scn1a-002 processed_transcript Mus_musculus 0 499
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 475
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 473
ENSMUST00000138910 Scn1a-006 protein_coding Mus_musculus 0 473
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 448
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 414
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 331
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 331
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 261
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 261
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 7e-28 128
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 7e-28 128
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 7e-28 128
ENSMUST00000141603 Scn9a-003 retained_intron Mus_musculus 7e-28 128
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 7e-28 128
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 7e-28 128

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