C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase type 13A5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143373 Atp13a5-003 ENSMUSG00000048939 10090 - 16:29232460-29378667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000143373
Transcript ID Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000143373 0.775±0.00 0.131±0.00 0.008±0.00 0.018±0.01 0.034±0.01 0.213±0.08 1.202±0.61 0.024±0.01 0.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N6 CIL_0000N6_0002 CGP 16:29209695-29378732
CIL_0000N5 CIL_0000N5_0002 CGP 16:29231851-29544864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0016021 IEA integral component of membrane
GO:0019829 IEA cation-transporting ATPase activity
GO:0046872 IEA metal ion binding
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295548 ATP13A4-009 protein_coding Homo_sapiens 0 237
ENST00000342358 ATP13A5-001 protein_coding Homo_sapiens 0 2750
ENST00000342695 ATP13A4-003 protein_coding Homo_sapiens 0 246
ENST00000392443 ATP13A4-007 protein_coding Homo_sapiens 0 246
ENST00000428352 ATP13A4-001 nonsense_mediated_decay Homo_sapiens 0 243
ENST00000437904 ATP13A4-011 nonsense_mediated_decay Homo_sapiens 4e-19 99
ENST00000446087 ATP13A5-005 protein_coding Homo_sapiens 0 318
ENST00000450950 ATP13A4-004 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000490925 ATP13A4-002 retained_intron Homo_sapiens 0 237
ENST00000495496 ATP13A5-004 processed_transcript Homo_sapiens 0 1134

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