C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phenylalanyl-tRNA synthetase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000144404 Farsa-004 ENSMUSG00000003808 10090 + 8:84857009-84867026 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleENSMUST00000144404
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle
ENSMUST00000144404 3.189±0.03 1.833±0.18 4.533±0.48 2.743±0.77 1.633±0.00 1.139±0.15 1.308±0.00 2.388±0.08 0.796±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0006LV CIL_0006LV_0002 CGP 8:84856989-84888221

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314606 FARSA-001 protein_coding Homo_sapiens 0 894
ENST00000423140 FARSA-002 protein_coding Homo_sapiens 0 531
ENST00000586146 FARSA-004 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000586280 FARSA-009 retained_intron Homo_sapiens 0 536
ENST00000587488 FARSA-010 protein_coding Homo_sapiens 1e-23 113
ENST00000587981 FARSA-007 protein_coding Homo_sapiens 0 433
ENST00000588025 FARSA-006 protein_coding Homo_sapiens 0 885
ENST00000588965 FARSA-003 retained_intron Homo_sapiens 0 885
ENST00000592662 FARSA-008 retained_intron Homo_sapiens 0 758
ENST00000593021 FARSA-005 protein_coding Homo_sapiens 0 464

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