C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587525 CACNA1A-013 ENSG00000141837 9606 - 19:13206494-13257400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastOvaryPlacentaTestisENST00000587525
Transcript ID Adipose Adrenal Brain Breast Ovary Placenta Testis
ENST00000587525 0.219±0.00 0.443±0.00 4.445±0.00 0.254±0.00 0.014±0.00 0.074±0.00 0.841±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005245 IEA voltage-gated calcium channel activity
GO:0005891 IEA voltage-gated calcium channel complex
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0055085 IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122053 Cacna1a-002 protein_coding Mus_musculus 0 2279
ENSMUST00000121390 Cacna1a-001 protein_coding Mus_musculus 0 2279
ENSDART00000150130 cacna1ab-001 protein_coding Danio_rerio 0 989
ENSDART00000008139 cacna1ab-201 protein_coding Danio_rerio 0 931
ENSMUST00000144879 Cacna1a-005 retained_intron Mus_musculus 0 832
ENSMUST00000141981 Cacna1a-008 retained_intron Mus_musculus 0 667
ENSMUST00000004214 Cacna1e-201 protein_coding Mus_musculus 0 542
ENSMUST00000187541 Cacna1e-001 protein_coding Mus_musculus 0 542
ENSMUST00000153691 Cacna1a-010 processed_transcript Mus_musculus 0 532
ENSMUST00000143215 Cacna1a-007 retained_intron Mus_musculus 0 505
ENSDART00000149273 cacna1ab-003 processed_transcript Danio_rerio 0 375
ENSDART00000148949 cacna1ab-004 protein_coding Danio_rerio 0 207
ENSMUST00000155356 Cacna1b-007 protein_coding Mus_musculus 2e-40 172
ENSMUST00000130507 Cacna1a-009 processed_transcript Mus_musculus 2e-34 148

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