C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000573710 CACNA1A-002 ENSG00000141837 9606 - 19:13207301-13506503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartENST00000573710
Transcript ID Adrenal Brain Colon Heart
ENST00000573710 0.199±0.00 0.788±0.00 0.019±0.00 0.023±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005245 ISS voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006112 TAS energy reserve metabolic process
GO:0006811 IEA ion transport
GO:0007204 ISS positive regulation of cytosolic calcium ion concentration
GO:0007268 IBA synaptic transmission
GO:0008219 IDA cell death
GO:0008331 IBA high voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0019905 IDA syntaxin binding
GO:0034765 IEA regulation of ion transmembrane transport
GO:0042995 IDA cell projection
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0050796 TAS regulation of insulin secretion
GO:0051899 TAS membrane depolarization
GO:0055085 IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122053 Cacna1a-002 protein_coding Mus_musculus 0 4693
ENSMUST00000121390 Cacna1a-001 protein_coding Mus_musculus 0 4693
ENSDART00000150130 cacna1ab-001 protein_coding Danio_rerio 0 1447
ENSDART00000008139 cacna1ab-201 protein_coding Danio_rerio 0 1382
ENSDART00000138765 cacna1aa-002 protein_coding Danio_rerio 0 1291
ENSDART00000144774 cacna1aa-001 protein_coding Danio_rerio 0 1291
ENSDART00000013228 cacna1aa-201 protein_coding Danio_rerio 0 1286
ENSMUST00000135382 Cacna1a-003 retained_intron Mus_musculus 0 1083
ENSMUST00000100348 Cacna1b-201 protein_coding Mus_musculus 0 1029
ENSMUST00000114447 Cacna1b-003 protein_coding Mus_musculus 0 1029
ENSMUST00000041342 Cacna1b-002 protein_coding Mus_musculus 0 1027
ENSMUST00000102939 Cacna1b-004 protein_coding Mus_musculus 0 1027
ENSMUST00000070864 Cacna1b-001 protein_coding Mus_musculus 0 1013
ENSMUST00000004214 Cacna1e-201 protein_coding Mus_musculus 0 965
ENSMUST00000187541 Cacna1e-001 protein_coding Mus_musculus 0 959
ENSMUST00000129620 Cacna1a-004 processed_transcript Mus_musculus 0 887
ENSMUST00000144879 Cacna1a-005 retained_intron Mus_musculus 0 832
ENSMUST00000141981 Cacna1a-008 retained_intron Mus_musculus 0 667
ENSDART00000134656 CACNA1E (2 of 2)-001 protein_coding Danio_rerio 0 645
ENSMUST00000153691 Cacna1a-010 processed_transcript Mus_musculus 0 532
ENSMUST00000143215 Cacna1a-007 retained_intron Mus_musculus 0 505
ENSMUST00000126302 Cacna1a-006 retained_intron Mus_musculus 0 473
ENSDART00000149273 cacna1ab-003 processed_transcript Danio_rerio 0 375
ENSDART00000148949 cacna1ab-004 protein_coding Danio_rerio 0 207
ENSMUST00000155356 Cacna1b-007 protein_coding Mus_musculus 4.00001e-40 172
ENSMUST00000125876 Tulp1-006 retained_intron Mus_musculus 0.00004 57
ENSMUST00000114794 Tulp1-004 protein_coding Mus_musculus 0.00004 57
ENSMUST00000140250 Tulp1-002 retained_intron Mus_musculus 0.00004 57
ENSMUST00000041819 Tulp1-001 protein_coding Mus_musculus 0.00004 57
ENSMUST00000130507 Cacna1a-009 processed_transcript Mus_musculus 2e-34 148

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