C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAX3 and PAX7 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145136 Paxbp1-008 ENSMUSG00000022974 10090 - 16:91025556-91030514 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0002 VISTA 16:90804484-91407069
CIL_00087M CIL_00087M_0002 VISTA 16:90839145-91442270
CIL_0009BQ CIL_0009BQ_0002 VISTA 16:90840152-91441411
CIL_000089 CIL_000089_0002 CGP 16:90936092-91044543
CIL_0007UY CIL_0007UY_0002 VISTA 16:90990868-91593443
CIL_0003TV CIL_0003TV_0002 CGP 16:91014037-91095122

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0008134 IPI transcription factor binding
GO:0014842 IMP regulation of satellite cell proliferation
GO:0031062 IDA positive regulation of histone methylation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:2000288 IMP positive regulation of myoblast proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290178 PAXBP1-005 protein_coding Homo_sapiens 0 219
ENST00000331923 PAXBP1-001 protein_coding Homo_sapiens 0 219
ENST00000421049 PAXBP1-008 nonsense_mediated_decay Homo_sapiens 0 505
ENST00000443785 PAXBP1-006 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000466846 PAXBP1-002 retained_intron Homo_sapiens 0 324
ENST00000497873 PAXBP1-003 retained_intron Homo_sapiens 9.80909e-45 185

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