C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAX3 and PAX7 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331923 PAXBP1-001 ENSG00000159086 9606 - 21:32733899-32771858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331923
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331923 2.479±0.00 2.546±0.00 1.026±0.00 3.224±0.00 1.413±0.00 3.854±0.00 1.950±0.00 1.721±0.37 0.884±0.64 5.580±3.85 1.210±0.32 3.858±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858
CIL_0003TV CIL_0003TV_0001 CGP 21:32733899-32813743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007517 IEA muscle organ development
GO:0008134 IEA transcription factor binding
GO:0014842 IEA regulation of satellite cell proliferation
GO:0031062 IEA positive regulation of histone methylation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:2000288 IEA positive regulation of myoblast proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118522 Paxbp1-001 protein_coding Mus_musculus 0 3799
ENSMUST00000023698 Paxbp1-002 nonsense_mediated_decay Mus_musculus 0 3367
ENSMUST00000127002 Paxbp1-007 processed_transcript Mus_musculus 0 1712
ENSMUST00000146281 Paxbp1-003 retained_intron Mus_musculus 0 835
ENSMUST00000124653 Paxbp1-004 retained_intron Mus_musculus 0 527
ENSMUST00000128922 Paxbp1-005 retained_intron Mus_musculus 0 326
ENSMUST00000145136 Paxbp1-008 nonsense_mediated_decay Mus_musculus 0 219

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