C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAX3 and PAX7 binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000466846 PAXBP1-002 ENSG00000159086 9606 - 21:32733900-32756794 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000466846
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000466846 0.729±0.00 2.097±0.00 0.723±0.00 1.517±0.53 1.627±0.61 1.200±0.57 0.637±0.28 0.683±0.00 0.711±0.00 0.979±0.37 0.475±0.00 1.618±0.44 0.258±0.00 2.191±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TI CIL_0008TI_0001 VISTA 21:32549146-33151638
CIL_00087M CIL_00087M_0001 VISTA 21:32616647-33220574
CIL_0009BQ CIL_0009BQ_0001 VISTA 21:32618474-33219807
CIL_000089 CIL_000089_0001 CGP 21:32628759-32771858
CIL_0003TV CIL_0003TV_0001 CGP 21:32733899-32813743

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118522 Paxbp1-001 protein_coding Mus_musculus 0 2012
ENSMUST00000023698 Paxbp1-002 nonsense_mediated_decay Mus_musculus 0 1971
ENSMUST00000146281 Paxbp1-003 retained_intron Mus_musculus 0 1092
ENSMUST00000128922 Paxbp1-005 retained_intron Mus_musculus 0 327
ENSMUST00000145136 Paxbp1-008 nonsense_mediated_decay Mus_musculus 0 324
ENSMUST00000124653 Paxbp1-004 retained_intron Mus_musculus 0 204

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